I love tidyverse but cannot understand how the authors disregard meaningless output so poorly. Here is how to quiet some of that extra cruft when you load in tidyverse
I love to use tidyverse when working on data but there is a bad habit that the authors have by spamming your output with messages they thing are informative. We need to have some basic ways to turn off this output if we are to use things link distil
to publish actual manuscripts directly instead of just simple markdown documents.
For example, consider the case when you load in the library tidyverse
. You get all this cruft which 99% of the time is just annoyring.
Registered S3 methods overwritten by 'dbplyr': method from print.tbl_lazy print.tbl_sql ── Attaching packages ───────────────────────────────────────────────────────────── tidyverse 1.3.1 ── ✓ ggplot2 3.3.5 ✓ purrr 0.3.4 ✓ tibble 3.1.6 ✓ dplyr 1.0.7 ✓ tidyr 1.2.0 ✓ stringr 1.4.0 ✓ readr 2.1.2 ✓ forcats 0.5.1 ── Conflicts ──────────────────────────────────────────────────────────────── tidyverse_conflicts() ── x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag()
That is now what we want! There are several other options (like asking about conflicts, warning that group_by
is not carried over after a summarize, etc), and we get it already. To turn these off put the following into your .Rprofile
file at the root of your home directory and it will make a beginning stab at it!
tidyverse.quiet = TRUE
dplyr.summarise.inform = FALSE
For attribution, please cite this work as
Dyer (2022, Feb. 1). The Dyer Laboratory: Unneceessary Output by dplyr. Retrieved from https://dyerlab.github.io/DLabWebsite/posts/2022-02-01-unneceessary-output-by-ttdplyrtt/
BibTeX citation
@misc{dyer2022unneceessary, author = {Dyer, Rodney}, title = {The Dyer Laboratory: Unneceessary Output by dplyr}, url = {https://dyerlab.github.io/DLabWebsite/posts/2022-02-01-unneceessary-output-by-ttdplyrtt/}, year = {2022} }